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Broad Institute Inc snp6 copy number analysis (gistic2)
Snp6 Copy Number Analysis (Gistic2), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/snp6+copy+number+analysis+(gistic2)/snp6+copy+number+analysis/pm37046096-1044-8-13
Average 90 stars, based on 1 article reviews
snp6 copy number analysis (gistic2) - by Bioz Stars, 2026-10
90/100 stars

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Related Articles

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Article Title: Angiogenic gene signature in human pancreatic cancer correlates with TGF-beta and inflammatory transcriptomes.
Article Snippet: Broad Institute TCGA Genome Data Analysis Center (2015): SNP6 Copy number analysis (GISTIC2).

Article Title: Germline genetic variants were interactively associated with somatic alterations in gastric cancer
Article Snippet: Output files of SNP6 copy number analysis (GISTIC2) were obtained from the Broad Institute Genome Data Analysis Center (GDAC) Firehose portal ( http://gdac.broadinstitute.org/runs/analyses__latest/reports/cancer/STAD-TP/CopyNumber_Gistic2/nozzle.html ).

Article Title: The evolution of lung cancer and impact of subclonal selection in TRACERx.
Article Snippet: Broad Institute TCGA Genome Data Analysis Center (2016): SNP6 Copy number analysis (GISTIC2) (Broad Institute of MIT and Harvard, 2016).

Mutagenesis:

Article Title: Loss of Parkinson’s susceptibility gene LRRK2 promotes carcinogen-induced lung tumorigenesis
Article Snippet: .. The following data were downloaded from the Broad Institute TCGA Genome Data Analysis Center: Level 3 TCGA LUAD clinical data (10.7908/C19P30S6), Level 3 TCGA LUAD mutation calls (10.7908/C11G0KM9), Level 4 somatic DNA alterations (SNP6 GISTIC2 copy number analysis (10.7908/C1348JSB), Level 4 MutSig 2CV version 3.1 mutation analysis (10.7908/C17P8XT3)), Level 3 TCGA LUAD RNA-seq data (10.7908/C11G0KM9). ..

RNA Sequencing:

Article Title: Loss of Parkinson’s susceptibility gene LRRK2 promotes carcinogen-induced lung tumorigenesis
Article Snippet: .. The following data were downloaded from the Broad Institute TCGA Genome Data Analysis Center: Level 3 TCGA LUAD clinical data (10.7908/C19P30S6), Level 3 TCGA LUAD mutation calls (10.7908/C11G0KM9), Level 4 somatic DNA alterations (SNP6 GISTIC2 copy number analysis (10.7908/C1348JSB), Level 4 MutSig 2CV version 3.1 mutation analysis (10.7908/C17P8XT3)), Level 3 TCGA LUAD RNA-seq data (10.7908/C11G0KM9). ..



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